rs33809554 SNP Detail

Summary

• ID
  rs33809554
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51547873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAGTCCT TTGGAGAGCA
  TCTTACTGTC AGTCAGAATC TACTGTGTCA CTGGAACAAT GATTAATCTG CTATCAGTTG
  GGACAATGGC AAGAAAGGTT GCATTCAGGG TTTAAGAATA GGACAACTTA AGGAAGGTTA
  AATAAAGAGC TGTTTGCAAA GGGTGTTGGC TGTGGACAAA GTGGAAGGAA TGGCAATGTA
  M
  ACAGGGATCA CTGCCCATGA AACATGTCCC ACCAGACCAG AGGGAAGGCT GATGGGACAG
  AAGCAGCCCT GTGAATAAGG CCACGGTACG AAGATTCCCA AAAGACAGTC AGATCCAGGT
  CCAGCACAAT ACACCTACTA CACACTCAAA GCCAAAACAG TACAGAAAAA AAATTGGTAA
  TTTCTAATAC TCACTCAGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47348966	NES11075109	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33809554					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47348966	NES11075109	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51547873 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	791 bp downstream
Gm70899	predicted gene, 70899	within coordinates
Rr33786	regulatory region 33786	within coordinates