rs33810380 SNP Detail

Summary

• ID
  rs33810380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51631568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTAATTC CATCCACTGA
  GACAAAACTT GCTTTCATTC TGGGTCTTCA AAGGTAGCAA ACACTGTTAA ATTGCCCAGT
  TGACATATGG GAAATACTGT CAAGAAAATA CCTAAATTAT CAAAGGGAAC TAAATTTTTT
  GTTTGTTCTG ACAGAGTGCA TTGGAGCTGT GTTCCCCTTC TCTTGCAAAT GCCCTCTTGG
  Y
  TCTTGGTCTC TCACAACCTT AGTCCCTTTT CATAGATAGT TCTACAGAGT GGAAGCAGCA
  TTCTCAACGA GTAGATGTCA GCTGGGGTTC AGCCTGGTTG AGTTCAGTTT TGGAGGAAGA
  CAACCCCAAG GTCTTTGATG TTATAAATGC TGAGGTATCA TGCCCAGTCA AGCTTTCAGG
  AAACATACCA AGTTAGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350154	NES11070505	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33810380					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350154	NES11070505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51631568 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1589 bp upstream
Rr410724	regulatory region 410724	1397 bp proximal
Tssr6634	transcription start site region 6634	1584 bp upstream
Tssr6635	transcription start site region 6635	1761 bp upstream
Tssr6636	transcription start site region 6636	1839 bp upstream