rs33810916 SNP Detail

Summary

• ID
  rs33810916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51634342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTCCCT CCACATACAA
  ACTCTCCTCA GACTATCTCT CATCAGACTG GGGCCACTTG CCTGTGTGGA CGCAGTTACC
  TTGGCATATC ACAGAACACA TGCTATGACT GGATTGTGCC TGTGGCCACC AGTTTGATCT
  GGCTGGCTTT AGATGCACTT ACTTCGGTCT AGGCCTCACT GCCCGATGCG GGAGTCTGCT
  Y
  CATCTGACTG GTCCTTGGAA GGCATGCATT TGCACAACAC CCACCCCCGC TTATTACTGC
  CTTCCCATTT TCCAACTCCA TAAAAGATCA TCAGTTCAAT AAAAATCTTA TCTCTGCCAC
  TTATTAAAGA AGAGCACTGC TAATGACATA GAAGCCGGAG GCAGTATTAA TTAGACTCTA
  GACCATCGCC ATGGCTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350256	NES11070395	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33810916					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350256	NES11070395	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51634342 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1002 bp downstream
Rr396024	regulatory region 396024	1877 bp upstream
Rr410724	regulatory region 410724	641 bp distal
Rr410725	regulatory region 410725	1709 bp proximal
Rr410726	regulatory region 410726	1995 bp proximal
Tssr6634	transcription start site region 6634	1185 bp downstream
Tssr6635	transcription start site region 6635	999 bp downstream
Tssr6636	transcription start site region 6636	932 bp downstream