rs33811284 SNP Detail

Summary

• ID
  rs33811284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177148454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCTAAC AACACAATAC
  AAAAATGAGA CAATACTAAT GTGATACATG CTGAGGAAAA TATTAAAACT TTATCCCCAT
  AATTACACCA TTAAGTTACT ACAAGAGCAG AAACCTTTGT GTTTACAGCA AATACACTGA
  AATTCATAAC CTAAATTCAT AACCTAATGT CAAGTCTAAG CTGAGGTGTT CTGGGTAGTG
  Y
  TTACTGACAC TGTATGGAAT GAGGGCATGC GTGGTGCAAA GTGCCCTTGT TCCGTATTTA
  TAACCAAGGC TGCAGGGATG TCATATGATA CTCAGTGAGC AACTGCTTCA GGAAATGCTT
  TGACTTTGTT ATGGTTTGGT TTTTAATTCA TTTTTGGTCA TTCTGGGTTC AGAAACCCTT
  CTACTGTTGC CAATTACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49537910	NES12810679	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33811284					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49537910	NES12810679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177148454 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	1840 bp proximal
Gm36904	predicted gene, 36904	within coordinates
Rr423981	regulatory region 423981	1363 bp proximal
Rr423982	regulatory region 423982	1864 bp proximal