rs33811418 SNP Detail

Summary

• ID
  rs33811418
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51631731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGTGTT CCCCTTCTCT
  TGCAAATGCC CTCTTGGCTC TTGGTCTCTC ACAACCTTAG TCCCTTTTCA TAGATAGTTC
  TACAGAGTGG AAGCAGCATT CTCAACGAGT AGATGTCAGC TGGGGTTCAG CCTGGTTGAG
  TTCAGTTTTG GAGGAAGACA ACCCCAAGGT CTTTGATGTT ATAAATGCTG AGGTATCATG
  M
  CCAGTCAAGC TTTCAGGAAA CATACCAAGT TAGTCTTAAT AGCTTCCTCC CCAAACACCA
  AAAATAAAAA CAGAGAGAGA AAGAAGGGGG AGCAGAAAGA TGACCAGAAT AACATCTGGG
  GTCGCTGTCA GCCCCGCTCA GAACCCTTGT CTCTGTGTAT CCTGTTCTGT GTGTCCTTGC
  CTCTGTGTGT ACTGCTTAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350163	NES11070509	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C	C	C	C	C	C	A	C	C	A
ss149111851	ENSMUSSNP6315620	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33811418					SNP	A	A	C	C	C	C	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350163	NES11070509	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51631731 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1426 bp upstream
Rr410724	regulatory region 410724	1234 bp proximal
Tssr6634	transcription start site region 6634	1421 bp upstream
Tssr6635	transcription start site region 6635	1598 bp upstream
Tssr6636	transcription start site region 6636	1676 bp upstream