rs33811527 SNP Detail

Summary

• ID
  rs33811527
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181943971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGAAGCGC GCTCAGAAAT AGTCATTCCA TTCAAAACAC
  TATTGGAGGG TTTTTTTCTC TTCCTTTTGC AGTGAAACTC AGGATCTCAC GCATAGTGGC
  M
  AGGTGCCCTG CCAACAACAC TTTACAGAGC AGAGTCCCTT CCTTTTCTCG CTTACCAGCT
  ACTGTCCCCA TTAGTTACTG TCCCCGTTGC TGAGATAAAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49538217	NES12844458	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33811527					SNP	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538217	NES12844458	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181943971 () rs orientation: forward

Symbol	Name	Function Class
Gm33725	predicted gene, 33725	within coordinates
Rr424861	regulatory region 424861	1865 bp distal
Rr424862	regulatory region 424862	614 bp distal
Rr424863	regulatory region 424863	976 bp distal
Rr424864	regulatory region 424864	113 bp distal
Rr424865	regulatory region 424865	498 bp distal