rs33811529 SNP Detail

Summary

• ID
  rs33811529
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181943877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATTTCG GGAGAATAAA
  CATAGCCACA CATGTTTGGC ATGCCAGCTG CACTTGGGAC ACTCGGGACT ATTGTGATGC
  CCATTAGAGG AGGAATTCAT TTAAGGACCC ACACCTGTTC TTAGTTCAGA ACAGCTGCTG
  CCCTGTGTGT AGAAGCCAAA CCAAGGAAAA CAGAGGGGGA CAAAAGTTCA AGCAGGAGAA
  K
  CGCGCTCAGA AATAGTCATT CCATTCAAAA CACTATTGGA GGGTTTTTTT CTCTTCCTTT
  TGCAGTGAAA CTCAGGATCT CACGCATAGT GGCCAGGTGC CCTGCCAACA ACACTTTACA
  GAGCAGAGTC CCTTCCTTTT CTCGCTTACC AGCTACTGTC CCCATTAGTT ACTGTCCCCG
  TTGCTGAGAT AAAATAGCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49538219	NES12844456	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33811529					SNP	G	G	G	G	T	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538219	NES12844456	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181943877 () rs orientation: forward

Symbol	Name	Function Class
Gm33725	predicted gene, 33725	within coordinates
Rr424861	regulatory region 424861	1771 bp distal
Rr424862	regulatory region 424862	520 bp distal
Rr424863	regulatory region 424863	882 bp distal
Rr424864	regulatory region 424864	19 bp distal
Rr424865	regulatory region 424865	404 bp distal