rs33811531 SNP Detail

Summary

• ID
  rs33811531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181942912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATA CACTGATAGG TTAGGTTGTC
  Y
  TGTCCTGACT GAGTTACCTG GTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49538224	NES12844451	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	C	C		T	T	T	T		T
ss320162411	CHEV_1_184045478	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33811531					SNP	T	T	C	T	T	T	C	C	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538224	NES12844451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181942912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	1964 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	1706 bp downstream
Rr424860	regulatory region 424860	1307 bp distal
Rr424861	regulatory region 424861	806 bp distal
Rr424862	regulatory region 424862	within coordinates
Rr424863	regulatory region 424863	62 bp proximal
Rr424864	regulatory region 424864	446 bp proximal
Rr424865	regulatory region 424865	540 bp proximal