rs33811533 SNP Detail

Summary

• ID
  rs33811533
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181942463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGTGTTT GTTCTGTTTG
  AAATCTGTTT CACTTAATGG ATTATTAGTG GTTCAAATCA CAAAAACATC AGCATCCTTG
  AGGCAGGGCA CAGGAGAGCT GGAGGCCACC TCCAGGACCT CAGAGGTGCA CCGGGTGTCT
  TAGAGGTGGG GCTGAGTCGA CTCCCAGGCT GCGTCCCAGC ACCTGGGCTT GGATGCCCGG
  M
  AGGCTCTTGC ACTGCCTGCC CTTGTTGCCC TGCCCCAGTC CCAATACGAT CTTGAGGCAG
  CAGGACAGGG ATTCTGAGCG ATGGACCTGG CTGACAGGAT AGTTCAGGAA TAGAGCAATT
  ACCTACTCAT GTACTAGAAA ATAAAAATAA GTAAAATCAT GGTAGGTATC CTAGCACTCA
  GAGGGCAGAG ACAGGAGGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49538230	NES12844445	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33811533					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538230	NES12844445	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181942463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	1515 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	1257 bp downstream
Rr424860	regulatory region 424860	858 bp distal
Rr424861	regulatory region 424861	357 bp distal
Rr424862	regulatory region 424862	247 bp proximal
Rr424863	regulatory region 424863	511 bp proximal
Rr424864	regulatory region 424864	895 bp proximal
Rr424865	regulatory region 424865	989 bp proximal