rs33811850 SNP Detail

Summary

• ID
  rs33811850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51623870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGTAATC TATATGCCTG
  TCATTCATTA CTACCTAACA GGAACAAAGA ACAACAACAA CAACAACAAA AACAGCAACA
  ATAACAAAAC CCACATAACT GATTTCAGCT GGGTGAATCT TAGCAGTAGG TTGATGCTGA
  TCTGTTCCGT AGTTCTCTAA GGGCCACTTA GAGTTTGTTT GTGCCATGGT CTTAGCAGGA
  R
  ATATGAGGGG AGAAGCCTCA CTAAATGAAC GCAGCCCAAG CACGCTATGT ATCATGAACA
  TTTCACAGAG GCAGAAACAT GTCCTGTAGC CAAAGCCGAG GGATGGGCAA GGTACTGAGC
  CTGGTGCTTC AGAGCAACAA TTAAGTCACA CAGTTTAAAC AACCAGAGGT AGGTCAGAAC
  CTGGAGGAAT GTGGTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47349884	NES11071143	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33811850					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47349884	NES11071143	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51623870 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	677 bp upstream
Rr366895	regulatory region 366895	220 bp upstream
Tssr6632	transcription start site region 6632	641 bp upstream
Tssr6633	transcription start site region 6633	702 bp upstream
Tssr11575	transcription start site region 11575	260 bp downstream
Tssr11576	transcription start site region 11576	551 bp downstream