rs33811853 SNP Detail

Summary

• ID
  rs33811853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51623970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCAGCT GGGTGAATCT
  TAGCAGTAGG TTGATGCTGA TCTGTTCCGT AGTTCTCTAA GGGCCACTTA GAGTTTGTTT
  GTGCCATGGT CTTAGCAGGA AATATGAGGG GAGAAGCCTC ACTAAATGAA CGCAGCCCAA
  GCACGCTATG TATCATGAAC ATTTCACAGA GGCAGAAACA TGTCCTGTAG CCAAAGCCGA
  R
  GGATGGGCAA GGTACTGAGC CTGGTGCTTC AGAGCAACAA TTAAGTCACA CAGTTTAAAC
  AACCAGAGGT AGGTCAGAAC CTGGAGGAAT GTGGTTTTTT TTTCCTCTCA ATTCTTGCTC
  CCAGCTATAA TGGTACAACG TAAGCAAGTC GCAGATGGTG TTGTGGTTTG GATCTGGAAT
  GCCTCCCAGA GGTATATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47349887	NES11071144	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	A	G	G	A	G	A	G	G	A
ss149111651	ENSMUSSNP5713689	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33811853					SNP	A	A	G	G	G	G	A	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47349887	NES11071144	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51623970 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	577 bp upstream
Rr366895	regulatory region 366895	120 bp upstream
Rr410721	regulatory region 410721	627 bp distal
Rr410722	regulatory region 410722	87 bp proximal
Rr410723	regulatory region 410723	588 bp proximal
Tssr6632	transcription start site region 6632	541 bp upstream
Tssr6633	transcription start site region 6633	602 bp upstream
Tssr11575	transcription start site region 11575	160 bp downstream
Tssr11576	transcription start site region 11576	451 bp downstream