rs33813066 SNP Detail

Summary

• ID
  rs33813066
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177277072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTGACAGG TTGTGTTGAT GCTCTTAGTT GAGTCTTGAA
  AAGTAAATAT TAACGCTACA GAAATGCATG AGTTTCAATA TATTTTTTGT CTTTGTTTGC
  W
  TTGTATAACT TTAACGAGTG AGTTTAAAAT TATTTAATTT CCTTAGAAAA ATAGCACCAT
  TTGGGAAAAA AACTGGTGTT ACGAAGAACA TAAATGCACT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49537262	NES12834027	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33813066					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49537262	NES12834027	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177277072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1082	CpG island 1082	956 bp distal
Rr29056	regulatory region 29056	71 bp distal
Rr29057	regulatory region 29057	128 bp proximal
Rr29058	regulatory region 29058	1128 bp proximal
Tssr313	transcription start site region 313	1644 bp downstream
Tssr10360	transcription start site region 10360	1296 bp downstream
Tssr10361	transcription start site region 10361	1255 bp downstream
Zbtb18	zinc finger and BTB domain containing 18	within coordinates