rs33813070 SNP Detail

Summary

• ID
  rs33813070
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177273901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG ATCAAAGTTC AGATGAAAAT
  K
  TTCAGAGTTA ACAGACTCTC TGGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49537268	NES12834150	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	T	G	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33813070					SNP	G	G	T	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49537268	NES12834150	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177273901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1082	CpG island 1082	1735 bp proximal
Rr29056	regulatory region 29056	within coordinates
Tssr312	transcription start site region 312	824 bp upstream
Tssr313	transcription start site region 313	1515 bp upstream
Tssr10348	transcription start site region 10348	1690 bp downstream
Tssr10349	transcription start site region 10349	1666 bp downstream
Tssr10350	transcription start site region 10350	1635 bp downstream
Tssr10351	transcription start site region 10351	1593 bp downstream
Tssr10352	transcription start site region 10352	663 bp downstream
Tssr10353	transcription start site region 10353	780 bp upstream
Tssr10354	transcription start site region 10354	812 bp upstream
Tssr10355	transcription start site region 10355	854 bp upstream
Tssr10356	transcription start site region 10356	942 bp upstream
Tssr10357	transcription start site region 10357	1018 bp upstream
Tssr10358	transcription start site region 10358	1112 bp upstream
Tssr10359	transcription start site region 10359	1129 bp upstream
Tssr10360	transcription start site region 10360	1864 bp upstream
Tssr10361	transcription start site region 10361	1908 bp upstream
Zbtb18	zinc finger and BTB domain containing 18	within coordinates