rs33813304 SNP Detail

Summary

• ID
  rs33813304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181942440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTTTCT CCTGTTGTTT
  TTGGGGTGTG TTTGTTCTGT TTGAAATCTG TTTCACTTAA TGGATTATTA GTGGTTCAAA
  TCACAAAAAC ATCAGCATCC TTGAGGCAGG GCACAGGAGA GCTGGAGGCC ACCTCCAGGA
  CCTCAGAGGT GCACCGGGTG TCTTAGAGGT GGGGCTGAGT CGACTCCCAG GCTGCGTCCC
  R
  GCACCTGGGC TTGGATGCCC GGCAGGCTCT TGCACTGCCT GCCCTTGTTG CCCTGCCCCA
  GTCCCAATAC GATCTTGAGG CAGCAGGACA GGGATTCTGA GCGATGGACC TGGCTGACAG
  GATAGTTCAG GAATAGAGCA ATTACCTACT CATGTACTAG AAAATAAAAA TAAGTAAAAT
  CATGGTAGGT ATCCTAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49538231	NES12844444	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33813304					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538231	NES12844444	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181942440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	1492 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	1234 bp downstream
Rr424860	regulatory region 424860	835 bp distal
Rr424861	regulatory region 424861	334 bp distal
Rr424862	regulatory region 424862	270 bp proximal
Rr424863	regulatory region 424863	534 bp proximal
Rr424864	regulatory region 424864	918 bp proximal
Rr424865	regulatory region 424865	1012 bp proximal