rs33813305 SNP Detail

Summary

• ID
  rs33813305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181941594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCATTAA TTAAAGCGAA
  CACTGTTCAT CCAGTGCTCT GGGGCATGGT TTAAAAAAAG AACCCAGAAC ATTTACCATT
  TGATAGAAAT AGCATTCGTC AGCGGGAGAG GTAACTGAAG TTTTACTCTT AGCCCCTTCA
  TTCCAAGAGT ACCCCCACCC TGTCCCGGTT CCCACCTTCC TTACCATGCT GCTTTGTTGA
  Y
  GAGGGAATCC CTGCCAGAGT TTGCTAATTG GGTTAATGGA GTGACTATGT AATTGTTCCC
  TCTCCCACAG CCCAGCCCAC CCCACTGGCT GCTTTCCGAC TACCTGCCTC TCACCACTTT
  CAGGATAGTT AATTTGCAAC AACAACTTCC ATTGTCGTCC ACATCTGGGA CTTTGGGGTT
  TTAAGTGATG CTCCCTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49538233	NES12844442	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33813305					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538233	NES12844442	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181941594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	646 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	388 bp downstream
Rr407119	regulatory region 407119	1976 bp distal
Rr424859	regulatory region 424859	1714 bp distal
Rr424860	regulatory region 424860	within coordinates
Rr424861	regulatory region 424861	12 bp proximal
Rr424862	regulatory region 424862	1116 bp proximal
Rr424863	regulatory region 424863	1380 bp proximal
Rr424864	regulatory region 424864	1764 bp proximal
Rr424865	regulatory region 424865	1858 bp proximal