rs33813306 SNP Detail

Summary

• ID
  rs33813306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181941132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCGCACT GCCCTCTCCA
  AGGCCTCTTC ACCAGAGGGT TATTCTAGGC ATGTGAGGTC ATCATGGTAT TCCCAGGACC
  CCCACCCCGC CCCCACCCAC TAGTGACACC TGTTGCTCTG TGTCCTTGCT CACCCCTGCT
  TGGATCAGAA AGCCTGATTG ACCATTTCAT ACGACGTACA TTGTCCTTCC CTCTAAATTC
  Y
  AGCTCCTTGG CACAGCCTGT ACAAAAGGAC TCAGAAGAAA CATTACTACG GTCACACTCT
  TCGATGCTGG TCCCCTTCTC GAAACCTAAG AAAGCTCTTG CAACCAGGAG GATGCTGGGG
  AGGGGTCCCC TGACCTTTTG GACTGGATGA CCAATGAGCT GACAGCTGTG TGCAATCAGG
  ACTCCACAGT CCCCGTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49538236	NES12844439	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33813306					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538236	NES12844439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181941132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	184 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	within coordinates
Rr407119	regulatory region 407119	1514 bp distal
Rr424857	regulatory region 424857	1690 bp distal
Rr424858	regulatory region 424858	1552 bp distal
Rr424859	regulatory region 424859	1252 bp distal
Rr424860	regulatory region 424860	within coordinates
Rr424861	regulatory region 424861	474 bp proximal
Rr424862	regulatory region 424862	1578 bp proximal
Rr424863	regulatory region 424863	1842 bp proximal