rs33813307 SNP Detail

Summary

• ID
  rs33813307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181941103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGGACCC CCACCCCGCC CCCACCCACT AGTGACACCT
  GTTGCTCTGT GTCCTTGCTC ACCCCTGCTT GGATCAGAAA GCCTGATTGA CCATTTCATA
  Y
  GACGTACATT GTCCTTCCCT CTAAATTCCA GCTCCTTGGC ACAGCCTGTA CAAAAGGACT
  CAGAAGAAAC ATTACTACGG TCACACTCTT CGATGCTGGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49538237	NES12844438	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33813307					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538237	NES12844438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181941103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	155 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	within coordinates
Rr407119	regulatory region 407119	1485 bp distal
Rr424857	regulatory region 424857	1661 bp distal
Rr424858	regulatory region 424858	1523 bp distal
Rr424859	regulatory region 424859	1223 bp distal
Rr424860	regulatory region 424860	within coordinates
Rr424861	regulatory region 424861	503 bp proximal
Rr424862	regulatory region 424862	1607 bp proximal
Rr424863	regulatory region 424863	1871 bp proximal