rs33814287 SNP Detail

Summary

• ID
  rs33814287
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141938087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAATCCCA TTTAACAACA GAGAGTGTCA GAAAACCCTA
  GAGAAGTAAT TGGTGGGAGG GGTACAGGGG GGTTACTCAG CAAACTGTAC TTTGCACGTG
  S
  GTAAGCCTGT CTAGGAAATA GCTGGCTAGA CCCAGACAGA TCGACCTTCT TCACGAAGTC
  ACAAGCCTGG GTCTCATGTT TCCTGTCACT GCCATAGCTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss47350101	NES11533308	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs33814287					SNP	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350101	NES11533308	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141938087 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	within coordinates
Gm49369	predicted gene, 49369	1683 bp upstream
Rr381604	regulatory region 381604	1858 bp upstream
Rr658152	regulatory region 658152	within coordinates
Rr658153	regulatory region 658153	1465 bp proximal
Tssr70143	transcription start site region 70143	1680 bp downstream
Tssr70144	transcription start site region 70144	875 bp downstream
Tssr70145	transcription start site region 70145	1108 bp upstream
Tssr70146	transcription start site region 70146	1140 bp upstream
Tssr75783	transcription start site region 75783	1630 bp upstream
Tssr75784	transcription start site region 75784	884 bp upstream
Tssr75785	transcription start site region 75785	855 bp upstream
Tssr75786	transcription start site region 75786	814 bp upstream
Tssr75787	transcription start site region 75787	1156 bp downstream
Tssr75788	transcription start site region 75788	1243 bp downstream
Tssr75789	transcription start site region 75789	1266 bp downstream
Tssr75790	transcription start site region 75790	1529 bp downstream
Tssr75791	transcription start site region 75791	1557 bp downstream
Tssr75792	transcription start site region 75792	1578 bp downstream