rs33814290 SNP Detail

Summary

• ID
  rs33814290
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141938508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATAAGA GATGCCAGGC
  TGTGGCCCAG AACCTTCCAC AGAGCTCGGA CCAGCTCACC ATGTGACTTC CAGAAATGTT
  TCTCCTCGGG GCCTACATTC CCTCCGAGGA GAGTGGGCTG CTGAGCCAGA CCTGTAACCT
  CAACCATTCG GGAGGCCAAG ATATGAGGAT GGTAAATTCA AAGCTAGCTT GGGCAATTAT
  S
  TCAAAAGTAA GAAAAAGGAG CGGGTACAGT GGTAGAGTTT GCCTAATATA AGGTACAAGG
  CCCTAGTCGG TTCAACCCCA GAGAAAGGGG GAAGGGAAGC ACTAAAGAGC CGGGGGCAGG
  TTGATCTTGG GAAAATGGCA AAGGGGATCA GAGACCTCTC CTAGAACTTG TACAGAGGGA
  GGCACCAGCA AGGTGGACCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350104	NES11533210	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33814290					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350104	NES11533210	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141938508 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	1437 bp upstream
Rr658152	regulatory region 658152	88 bp distal
Rr658153	regulatory region 658153	1044 bp proximal
Tssr70144	transcription start site region 70144	1296 bp downstream
Tssr70145	transcription start site region 70145	687 bp upstream
Tssr70146	transcription start site region 70146	719 bp upstream
Tssr75784	transcription start site region 75784	1305 bp upstream
Tssr75785	transcription start site region 75785	1276 bp upstream
Tssr75786	transcription start site region 75786	1235 bp upstream
Tssr75787	transcription start site region 75787	735 bp downstream
Tssr75788	transcription start site region 75788	822 bp downstream
Tssr75789	transcription start site region 75789	845 bp downstream
Tssr75790	transcription start site region 75790	1108 bp downstream
Tssr75791	transcription start site region 75791	1136 bp downstream
Tssr75792	transcription start site region 75792	1157 bp downstream
Tssr75793	transcription start site region 75793	1900 bp downstream