rs33814293 SNP Detail

Summary

• ID
  rs33814293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141938558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTCACC ATGTGACTTC
  CAGAAATGTT TCTCCTCGGG GCCTACATTC CCTCCGAGGA GAGTGGGCTG CTGAGCCAGA
  CCTGTAACCT CAACCATTCG GGAGGCCAAG ATATGAGGAT GGTAAATTCA AAGCTAGCTT
  GGGCAATTAT GTCAAAAGTA AGAAAAAGGA GCGGGTACAG TGGTAGAGTT TGCCTAATAT
  R
  AGGTACAAGG CCCTAGTCGG TTCAACCCCA GAGAAAGGGG GAAGGGAAGC ACTAAAGAGC
  CGGGGGCAGG TTGATCTTGG GAAAATGGCA AAGGGGATCA GAGACCTCTC CTAGAACTTG
  TACAGAGGGA GGCACCAGCA AGGTGGACCT ATATAGGTCC AGTAACTCTC TCCCAGACTC
  CCACCAGGCT AGGTTTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47350107	NES11533211	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33814293					SNP	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350107	NES11533211	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141938558 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Rr381604	regulatory region 381604	1387 bp upstream
Rr658152	regulatory region 658152	138 bp distal
Rr658153	regulatory region 658153	994 bp proximal
Tssr70144	transcription start site region 70144	1346 bp downstream
Tssr70145	transcription start site region 70145	637 bp upstream
Tssr70146	transcription start site region 70146	669 bp upstream
Tssr75784	transcription start site region 75784	1355 bp upstream
Tssr75785	transcription start site region 75785	1326 bp upstream
Tssr75786	transcription start site region 75786	1285 bp upstream
Tssr75787	transcription start site region 75787	685 bp downstream
Tssr75788	transcription start site region 75788	772 bp downstream
Tssr75789	transcription start site region 75789	795 bp downstream
Tssr75790	transcription start site region 75790	1058 bp downstream
Tssr75791	transcription start site region 75791	1086 bp downstream
Tssr75792	transcription start site region 75792	1107 bp downstream
Tssr75793	transcription start site region 75793	1850 bp downstream