rs33814334 SNP Detail

Summary

• ID
  rs33814334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142064147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCCTTAC AGGCTCTCGT
  TCATTTGGGC GCTCAGAACG AAAGATTAAA AGTGTCCAGA GCCACAGGAC AGGTCTCACT
  CCAGAAGCTG ATGTCAGTCA CTCACTGCCC CTGGAGCTCC TGTGGTAGCC AGCCACCCTG
  CCTTGGGCTA GGACCTGGCT CCATTTGTTT ATGTGTCTGA GAAAGGTGGC ATGAAGCAGC
  R
  AGTAAAACAG AGATGAGCAC AAGCAGGGTG ATACCTTCTA GGAAGGAACA AACTTCTCCC
  AGGGGCATGG GTTAGAAACC CAAGAACAAA GAGCCAGGCA AAGCTGCTTT AGTTGAGACA
  TACATGCTCT GTTGGGTGCC AGGGTGCAAG AAAGAGAAGG AGGGCCAGCC TAGATTTGAG
  GCTGGCTGGG CTCCGCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350959	NES11528244	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33814334					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350959	NES11528244	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142064147 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr658204	regulatory region 658204			within coordinates
Tnnt3	troponin T3, skeletal, fast			Intron
				Noncoding-Transcript-Variant
Tssr2457	transcription start site region 2457			1105 bp upstream
Tssr70197	transcription start site region 70197			485 bp downstream
Tssr70198	transcription start site region 70198			245 bp upstream
Tssr70199	transcription start site region 70199			861 bp upstream
Tssr70200	transcription start site region 70200			927 bp upstream
Tssr70201	transcription start site region 70201			1064 bp upstream
Tssr70202	transcription start site region 70202			1623 bp upstream
Tssr70203	transcription start site region 70203			1642 bp upstream
Tssr70204	transcription start site region 70204			1837 bp upstream
Tssr70205	transcription start site region 70205			1856 bp upstream
Tssr75809	transcription start site region 75809			1661 bp downstream
Tssr75810	transcription start site region 75810			1717 bp downstream
Tssr75811	transcription start site region 75811			1871 bp downstream