rs33814336 SNP Detail

Summary

• ID
  rs33814336
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142064697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATAGGC TTCAGGTCAT
  GTCTTCTCAA GCAGCCAGAC CCAAGGCAGG CCAACTCTAG GCCACACTCC ACTAATTCGC
  TCCTAGACCC CAGGAAGTCA ACATCCCTTC TTATTCCCTC CATACATTCT TGTACCCACA
  AACTCATCCA CTCATCTGCC CAGCCCGTCT CTCAACTGTC TCATTCATCT GTCCACTTAT
  W
  TGTTCAAGCA CTCATCCACG TATGCAGCAA ATTAATCTCA CGGTTTCCTC TCTGCCAGAC
  CCAAGAGGCT ATCTGAGGAT GACAGTGCCA AGTCTGAGCC AGGTCACCTC AAGAATGGTA
  CTGGCTTCAT GATCAGCCAG GGCCTAGGTT CCTCCGTGAC CCTATACCCA AGGCCACACT
  GAGCCTCAGG AAGGCAGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350962	NES11528245	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33814336					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350962	NES11528245	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142064697 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr658204	regulatory region 658204			192 bp distal
Tnnt3	troponin T3, skeletal, fast			Intron
				Noncoding-Transcript-Variant
Tssr2457	transcription start site region 2457			555 bp upstream
Tssr70197	transcription start site region 70197			1035 bp downstream
Tssr70198	transcription start site region 70198			285 bp downstream
Tssr70199	transcription start site region 70199			311 bp upstream
Tssr70200	transcription start site region 70200			377 bp upstream
Tssr70201	transcription start site region 70201			514 bp upstream
Tssr70202	transcription start site region 70202			1073 bp upstream
Tssr70203	transcription start site region 70203			1092 bp upstream
Tssr70204	transcription start site region 70204			1287 bp upstream
Tssr70205	transcription start site region 70205			1306 bp upstream
Tssr75809	transcription start site region 75809			1111 bp downstream
Tssr75810	transcription start site region 75810			1167 bp downstream
Tssr75811	transcription start site region 75811			1321 bp downstream