rs33814338 SNP Detail

Summary

• ID
  rs33814338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142064853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCAGCCC GTCTCTCAAC
  TGTCTCATTC ATCTGTCCAC TTATATGTTC AAGCACTCAT CCACGTATGC AGCAAATTAA
  TCTCACGGTT TCCTCTCTGC CAGACCCAAG AGGCTATCTG AGGATGACAG TGCCAAGTCT
  GAGCCAGGTC ACCTCAAGAA TGGTACTGGC TTCATGATCA GCCAGGGCCT AGGTTCCTCC
  R
  TGACCCTATA CCCAAGGCCA CACTGAGCCT CAGGAAGGCA GCAGCTGTAG AGACCTGGCA
  GAGGGTGTCC CTAGCTGGAG GTGGGTTCCA GGCTGGCGAG AAGGGGTAGG AACTTTTCTC
  TCGCCACCCC CAACCCCCAG GACATCCAGA AGAAGCGTCA AAACAAGGAC CTCATGGAGC
  TCCAAGCCCT CATTGACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47350965	NES11528246	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33814338					SNP	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350965	NES11528246	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142064853 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr658204	regulatory region 658204			348 bp distal
Tnnt3	troponin T3, skeletal, fast			Intron
				Noncoding-Transcript-Variant
Tssr2457	transcription start site region 2457			399 bp upstream
Tssr70197	transcription start site region 70197			1191 bp downstream
Tssr70198	transcription start site region 70198			441 bp downstream
Tssr70199	transcription start site region 70199			155 bp upstream
Tssr70200	transcription start site region 70200			221 bp upstream
Tssr70201	transcription start site region 70201			358 bp upstream
Tssr70202	transcription start site region 70202			917 bp upstream
Tssr70203	transcription start site region 70203			936 bp upstream
Tssr70204	transcription start site region 70204			1131 bp upstream
Tssr70205	transcription start site region 70205			1150 bp upstream
Tssr75809	transcription start site region 75809			955 bp downstream
Tssr75810	transcription start site region 75810			1011 bp downstream
Tssr75811	transcription start site region 75811			1165 bp downstream