rs33814340 SNP Detail

Summary

• ID
  rs33814340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142065142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGGCG AGAAGGGGTA
  GGAACTTTTC TCTCGCCACC CCCAACCCCC AGGACATCCA GAAGAAGCGT CAAAACAAGG
  ACCTCATGGA GCTCCAAGCC CTCATTGACA GCCACTTTGA AGCTAGAAAG AAAGAAGAAG
  AGGAGCTAAT CGCACTTAAA GAAAGAATTG TGAGCACTGC TGCCCTGGGA GGTTGCTGGG
  Y
  ACTCCGCAGG GACTGGGCAA GACAGGGAGG GGCTGACCAG TTTGCCCTCT TGGCTGCAGG
  AGAAGCGCCG TGCAGAGAGG GCTGAGCAGC AAAGAATTCG CGCTGAGAAG GAGCGGGAAC
  GCCAGAACAG ATTGGCGGTA AGGACTGTGC CTTCCTGTTG TCTCCAAGCC TATGTAGCCA
  GAAAAGCACA TATATCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350968	NES11528247	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33814340					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350968	NES11528247	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142065142 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr658204	regulatory region 658204			637 bp distal
Tnnt3	troponin T3, skeletal, fast			Intron
				Noncoding-Transcript-Variant
Tssr2457	transcription start site region 2457			110 bp upstream
Tssr70197	transcription start site region 70197			1480 bp downstream
Tssr70198	transcription start site region 70198			730 bp downstream
Tssr70199	transcription start site region 70199			90 bp downstream
Tssr70200	transcription start site region 70200			53 bp downstream
Tssr70201	transcription start site region 70201			69 bp upstream
Tssr70202	transcription start site region 70202			628 bp upstream
Tssr70203	transcription start site region 70203			647 bp upstream
Tssr70204	transcription start site region 70204			842 bp upstream
Tssr70205	transcription start site region 70205			861 bp upstream
Tssr75809	transcription start site region 75809			666 bp downstream
Tssr75810	transcription start site region 75810			722 bp downstream
Tssr75811	transcription start site region 75811			876 bp downstream