rs33815346 SNP Detail

Summary

• ID
  rs33815346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141939324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAGCCCA GGGAGCTAGC
  TCCTCCCACA CTCACCCCTC AAAGCAAGAC CCCAAAATAC AACTGCACTC ACATCCAGGT
  AGTTTTTGAG TAACTCTGAC ACTGGCTCCG TGGTCTTAGG CGATGACTGC ATGGAGTACT
  TGGTGATGGG GCCTTTGAGG ATCAGGTCTT CCACAGAGCC GCCCACCTCC GTCATAGTCC
  R
  ACGGATAGAT GTGAACTTGC GCAGAGGGAT TCTGTCAAGA TGGGACAGAG GTATTAGCAC
  CCAGCTTTGA CTGCTGTGTC CTCCAACCTC CCACCCCAAA ATACCCCAGG CTGGGCCAGG
  GCAGCCCTCT AGTACAGAAT GACTGCCAGC CAGGCATGCA CCTAGGTGCC TCTAGCAAAT
  TAAATATCTC AAAATGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350113	NES11533213	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33815346					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350113	NES11533213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141939324 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	1846 bp proximal
Ctsd	cathepsin D	Coding-NonSynonymous
Rr381604	regulatory region 381604	621 bp upstream
Rr658152	regulatory region 658152	904 bp distal
Rr658153	regulatory region 658153	228 bp proximal
Tssr70145	transcription start site region 70145	98 bp downstream
Tssr70146	transcription start site region 70146	77 bp downstream
Tssr70147	transcription start site region 70147	1413 bp upstream
Tssr75787	transcription start site region 75787	within coordinates
Tssr75788	transcription start site region 75788	6 bp downstream
Tssr75789	transcription start site region 75789	29 bp downstream
Tssr75790	transcription start site region 75790	292 bp downstream
Tssr75791	transcription start site region 75791	320 bp downstream
Tssr75792	transcription start site region 75792	341 bp downstream
Tssr75793	transcription start site region 75793	1084 bp downstream
Tssr75794	transcription start site region 75794	1238 bp downstream
Tssr75795	transcription start site region 75795	1262 bp downstream