rs33815349 SNP Detail

Summary

• ID
  rs33815349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141939604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCAACCT CCCACCCCAA
  AATACCCCAG GCTGGGCCAG GGCAGCCCTC TAGTACAGAA TGACTGCCAG CCAGGCATGC
  ACCTAGGTGC CTCTAGCAAA TTAAATATCT CAAAATGGCC ACAACATGTC ACAAACTCCT
  GCCCCAAAGC CATAGGCCCA CTGGCCCACT GACCCACTGA ATCAGCTAAG GACATCCTAT
  Y
  ACTACCACAG ACACCTCAGG TTCAGTCACA GAAGCTCGCT CCTCATGTCC AAGGATAGGC
  TAGTGTGCCC ACCCCTTTCC CTCACCAACC ACACCCCAGT CAGGTGGTTC TCAGTCACCC
  TAGAGTGAAA CAAACAGCAC ATACTGGGCC AGCTCTTGCT CTGTCTGCCT ACCTGGGTTA
  CTGGCTAGTG GGTTCTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350116	NES11533214	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33815349					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350116	NES11533214	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141939604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	1566 bp proximal
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	341 bp upstream
Rr658152	regulatory region 658152	1184 bp distal
Rr658153	regulatory region 658153	within coordinates
Rr658154	regulatory region 658154	1965 bp proximal
Rr658155	regulatory region 658155	1980 bp proximal
Tssr70145	transcription start site region 70145	378 bp downstream
Tssr70146	transcription start site region 70146	357 bp downstream
Tssr70147	transcription start site region 70147	1133 bp upstream
Tssr75787	transcription start site region 75787	278 bp upstream
Tssr75788	transcription start site region 75788	256 bp upstream
Tssr75789	transcription start site region 75789	236 bp upstream
Tssr75790	transcription start site region 75790	12 bp downstream
Tssr75791	transcription start site region 75791	40 bp downstream
Tssr75792	transcription start site region 75792	61 bp downstream
Tssr75793	transcription start site region 75793	804 bp downstream
Tssr75794	transcription start site region 75794	958 bp downstream
Tssr75795	transcription start site region 75795	982 bp downstream
Tssr75796	transcription start site region 75796	1953 bp downstream
Tssr75797	transcription start site region 75797	1986 bp downstream