rs33815524 SNP Detail

Summary

• ID
  rs33815524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142012499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACATGG GGTGACTCCT
  GGTGAGGCCT TCTTAATGCC CACCAAGTGG CAAAACAACC CATTAGGAAG GGCTCATATA
  AACACACACA CACACACACA CACACACACA CACACACACA CACACCACAC ACACCACACA
  CACACACACA CACACACACA CACACACACA CACACACACA CGCATCTCTG CTGGTAGGGT
  Y
  GAAATTTCTG TTTGGAAAAT GTTAGCTGCT GTTAGATCAG AGGCCTGAAA ATTAGGAAGT
  CAGTCCAACC TATAGGTGGC CAATGGCCTC TGCCTGCCTG TCCTTTAGCC ATAAAAACCA
  ACCAGCAGGC CAAAGGGAGG TCATATAGCA GTGTCTGGAA TTCCCAGATA ATTCTGCTGT
  GTATGTGCCA GGGCATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47350686	NES11529882	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C		C	C	C	C		C
ss322471342	CHEV_7_149644667	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33815524					SNP	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350686	NES11529882	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142012499 () rs orientation: forward

Symbol	Name	Function Class
D430042D18Rik	Riken cDNA D430042D18 gene	within coordinates
Rr154798	regulatory region 154798	1099 bp distal
Rr154799	regulatory region 154799	within coordinates
Rr166987	regulatory region 166987	1901 bp proximal
Rr400723	regulatory region 400723	1839 bp upstream