rs33815530 SNP Detail

Summary

• ID
  rs33815530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142013155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGACTG GGGTTTTCCC
  CTTGGGCAGA GCTGGCTCTG CAGGCTTGAA GGGTCTGTGC TATTAGGGTC TGAATTTCCA
  TCTGAAAGAT GTTAGCTGCT GGATTTGAGG TCCTGAAAAC TATGAAACCA ATCCAGTCTG
  TAGGTAGCCA ATGGTCTCCA CCTCTCCATC CCCCAGCCCT AAGGACAAAC AGGCCACAGA
  R
  AGTTCATAGA TTAGTGGCTG GAATGCACCG ATAAGGTGCC TGGATGGCGA GGCCCTGTGA
  CAGACATAGG AACCAGTGAA AACCTCTTAA GAGGTGTCAG GACAGAAGTG GCATAACTCT
  GTCACCTGCC AAATGCATTC CCAGCCACTT ATCAACAGAG CACTTAGGAG GGTCCCAAGG
  AAGCAAAGTG CAAAAGGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350692	NES11529814	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33815530					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350692	NES11529814	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142013155 () rs orientation: forward

Symbol	Name	Function Class
D430042D18Rik	Riken cDNA D430042D18 gene	within coordinates
Lsp1	lymphocyte specific 1	1428 bp upstream
Rr154798	regulatory region 154798	1755 bp distal
Rr154799	regulatory region 154799	555 bp distal
Rr166987	regulatory region 166987	1245 bp proximal
Rr400723	regulatory region 400723	1183 bp upstream
Tssr70170	transcription start site region 70170	1405 bp upstream
Tssr70171	transcription start site region 70171	1416 bp upstream