rs33815541 SNP Detail

Summary

• ID
  rs33815541
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142066884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTGTGT CTCTTGGGGG
  CTGGGAGGAA GGTCAGGGCA TACGGAATGA GGTTGCAACC TTCATAGGTA TTGAGGGCAA
  GGTAAGGGGC TGCAGAAATG GGGCAGGCCT TTCCTTGAGG GATGAGGTAG AAGCAAGCTT
  GTTCTTACAC ACCATGGATG CGGGGAAGGG CACCTGTCCT GGTGCCTAAT GTGCTTAGGG
  M
  AAATGCAAAT ACCTTGGGTT CACTGGCAAA TCAGTGCTGT CCTTCCCTCC TGTCCCTCCA
  ATGCCCACTG AGGGGAGAGG TAGGAGCTCA TGCATGAGCA TCTTCCACAG CCATCAAGAT
  AGACAAGAGG TTGGCTCCTT CTTCCAACCT CTGGGAAGAT GAGCTAAAAC CTTCTTGCAA
  CCTCTGGGTA GATGACATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350983	NES11528252	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33815541					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350983	NES11528252	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142066884 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tnnt3	troponin T3, skeletal, fast			Intron
				Noncoding-Transcript-Variant
Tssr2457	transcription start site region 2457			1621 bp downstream
Tssr70199	transcription start site region 70199			1832 bp downstream
Tssr70200	transcription start site region 70200			1795 bp downstream
Tssr70201	transcription start site region 70201			1646 bp downstream
Tssr70202	transcription start site region 70202			1102 bp downstream
Tssr70203	transcription start site region 70203			1077 bp downstream
Tssr70204	transcription start site region 70204			891 bp downstream
Tssr70205	transcription start site region 70205			867 bp downstream
Tssr75809	transcription start site region 75809			1037 bp upstream
Tssr75810	transcription start site region 75810			995 bp upstream
Tssr75811	transcription start site region 75811			843 bp upstream