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rs33815956 SNP Detail
Summary
  • ID
    rs33815956
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:181717601 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGCCCTTTC TCAGTTGCCC
    CACGCCCTTC GGGAGCACTT CCGGGAATGC GCTGCACCTC TAATCACAGG TGCCTCTATA
    AAATCTTCAC TTTTTCCTGC TTCCCACTCT CTCTTTAGGG ATTCCTACAG GAACCCTTTG
    CCTAGGCATG GCCTAAACAA TGGTACTTTG GTTTTAAGTG CCGAGGAGGA AGGTGGTTGC
    W
    AGCAGGTCTG GTAAAGTCAA GCGTCAAGTC TGCTGGCTCA GTCTAACTTT CCTCTCCTGT
    TGCAAAGTGG ATGCAGTGGC TCTGAGAATT AAATACATGT CATCAAGAAA GAGAACTGAA
    GACTGAGTGA GGTTTGGGCA AAGCGCTTTT CCACATTGAT CTTCCTCTTA TGTTGGAGGA
    AAAAGTCTTT GCTGAACGTT                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss49539214 NES12813336 PERLEGEN MM_PANEL2 f SNP A A A A A A T A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33815956 SNP A A A A A A T A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49539214 NES12813336 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:181717601 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr396680 regulatory region 396680 846 bp downstream
Rr424824 regulatory region 424824 579 bp distal
Rr424825 regulatory region 424825 1063 bp distal
Rr424826 regulatory region 424826 1014 bp distal
Rr424827 regulatory region 424827 685 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory