rs33815959 SNP Detail

Summary

• ID
  rs33815959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181717464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCAAATT GACTGGATTG
  TGGCGTGTCC TGATCATTTG GGCAAGTGTT ATTCTGGGTG TGTCCCTGGG GCTGAAGTGC
  CATGTCAAAG TGGCTGTGAG AGAACAGAAC TTGGCCCCAA GTCTCACCAC AAGGGACTGG
  CCCTTTCTCA GTTGCCCCAC GCCCTTCGGG AGCACTTCCG GGAATGCGCT GCACCTCTAA
  Y
  CACAGGTGCC TCTATAAAAT CTTCACTTTT TCCTGCTTCC CACTCTCTCT TTAGGGATTC
  CTACAGGAAC CCTTTGCCTA GGCATGGCCT AAACAATGGT ACTTTGGTTT TAAGTGCCGA
  GGAGGAAGGT GGTTGCAAGC AGGTCTGGTA AAGTCAAGCG TCAAGTCTGC TGGCTCAGTC
  TAACTTTCCT CTCCTGTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49539217	NES12813333	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33815959					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49539217	NES12813333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181717464 () rs orientation: forward

Symbol	Name	Function Class
Rr396680	regulatory region 396680	709 bp downstream
Rr424824	regulatory region 424824	442 bp distal
Rr424825	regulatory region 424825	926 bp distal
Rr424826	regulatory region 424826	877 bp distal
Rr424827	regulatory region 424827	548 bp distal