rs33816136 SNP Detail

Summary

• ID
  rs33816136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51632712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTGGAA CATAACACTA
  ATTGTCTAAA AAGGAAATTA CTTGGTTTAC CTCTTCCACA TAGGACACAG TCTACCTGGG
  TTAGCATATC AGAAACCATT TTGACAAGTG TGTATCCTCA GGGCCTATCT TATTACTGTA
  ACTCAATAAA TCATGACCAA GTCTTAAACA AGTGCCCTGG CCTCAGTTAA CCAATCTATA
  Y
  AATGATATTC TTGCATAAGT GATCTGCAAA GCTCTTCCAG ATTTTAAAAG TATGTATTTA
  TAGGATAAAA GAAATGATTG CTCAATATAT AAGCACAAAA ATTATGGTAT ATCCATAGAA
  ATGGATTAAT CATCTCTCAG CAATAGATAT AAAAAAAGAA TGAACCTTAG CTACACACAA
  CAATGCGGAT GAATCTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350214	NES11070526	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	T	C	C	T
ss149111894	ENSMUSSNP5044417	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33816136					SNP	T	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350214	NES11070526	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51632712 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	445 bp upstream
Rr410724	regulatory region 410724	253 bp proximal
Tssr6634	transcription start site region 6634	440 bp upstream
Tssr6635	transcription start site region 6635	617 bp upstream
Tssr6636	transcription start site region 6636	695 bp upstream