rs33816331 SNP Detail

Summary

• ID
  rs33816331
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:47882373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATACATA TGTTCATATA
  TATTTGATTG ATTGATTGAT TGTTTGATTG GTAAAGATAA AGGGTGGGGG TGCAGTTCAG
  AGACAGGATC CTTACGTAGC ATGTAAGAGG CCCAGCATTG CTAACCAGTC AGGCAGTCAG
  AGGATCCACA TTTCTGGGTG TGGAACAGAA TCCCCTGTCC CTTCCTCCAG ACAGGGTGTC
  M
  CGATGACATA GGCCAGGGTT GCCCTCCATT TCTGCTTTTT CTGCTTGGTC GCCATCACTG
  AGTCCAGGGC ACGAAGAGAA GCAGCAGATG TAGCACTAAC CACAGGTACC TTAAACTGGA
  CGTCTTCCGC TTGTGTTCCC ACGTCTTCTG AACCCACTAG ACAGCTTAGG ACTGCTCTGT
  GACCAGTGTG CCCCAGCGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48365599	NES12224027	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33816331					SNP	C	C	C	C	C	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365599	NES12224027	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47882373 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	Intron
D17Dcr11	DNA Segment, Chr 17, Derry C. Roopenian 11	1158 bp distal
D17Mit68	DNA segment, Chr 17, Massachusetts Institute of Technology 68	1163 bp distal
Rr392688	regulatory region 392688	within coordinates
Rr528050	regulatory region 528050	within coordinates