rs33816333 SNP Detail

Summary

• ID
  rs33816333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47880956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGAACC CCCAGAGATT
  CGTAAACGTG ACTGGATTTA TTTGGTTTTG TTTTTTGACA CGGGGTCTCC TGTAGCCCAT
  GTTGGCTCTA AATGCAATGC ATAGTTGGGG ATGCCCCTGG GTCTCCGGTT CTCCTGCTTC
  TTTACCGCTT AAATGCTGGG CTCAGAGACA TCTACCAGCA GGCTCAGTAG TGTGAAGATA
  R
  AACTCTTTAT GCAGAGGTAC AAGAAAAAAG AATTTGAGTC CTGCCTAGGG AAAGTCCTAC
  AGCTCTCAGC TGTTTCTGAA TCGCTTGCAG ATGATGTCGA GCCTGGTGGC ACTCACCTAT
  GATCCTACCG TTTGGAAGGC TGAGGCGGGA GTTCAAGACC AGCCTGGGAT ACCCAGTAAC
  ACCATCTCAC TTACACACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48365601	NES12224052	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33816333					SNP	A	A	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365601	NES12224052	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47880956 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
D17Dcr11	DNA Segment, Chr 17, Derry C. Roopenian 11	159 bp proximal
D17Mit68	DNA segment, Chr 17, Massachusetts Institute of Technology 68	125 bp proximal
Rr392688	regulatory region 392688	1105 bp upstream
Rr528049	regulatory region 528049	653 bp distal
Rr528050	regulatory region 528050	1313 bp proximal