rs33816525 SNP Detail

Summary

• ID
  rs33816525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141939746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAAGCCA TAGGCCCACT
  GGCCCACTGA CCCACTGAAT CAGCTAAGGA CATCCTATCA CTACCACAGA CACCTCAGGT
  TCAGTCACAG AAGCTCGCTC CTCATGTCCA AGGATAGGCT AGTGTGCCCA CCCCTTTCCC
  TCACCAACCA CACCCCAGTC AGGTGGTTCT CAGTCACCCT AGAGTGAAAC AAACAGCACA
  Y
  ACTGGGCCAG CTCTTGCTCT GTCTGCCTAC CTGGGTTACT GGCTAGTGGG TTCTGTTTAG
  GGTGTGGCCA GGCACTTGTA CCTGGTGCCC TGGTGAACCC AATCCTACAT CAGGAGGAGG
  TGGAGGAGGA GGAGGAACAG GTGCATCCAA AGCAAGGTGC ACCATGGGAC TCTGGTTGAT
  CCACTGAACC TGGCCCCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47350122	NES11533216	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33816525					SNP	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350122	NES11533216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141939746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	1424 bp proximal
Ctsd	cathepsin D	Intron
Rr381604	regulatory region 381604	199 bp upstream
Rr658152	regulatory region 658152	1326 bp distal
Rr658153	regulatory region 658153	within coordinates
Rr658154	regulatory region 658154	1823 bp proximal
Rr658155	regulatory region 658155	1838 bp proximal
Tssr70145	transcription start site region 70145	520 bp downstream
Tssr70146	transcription start site region 70146	499 bp downstream
Tssr70147	transcription start site region 70147	991 bp upstream
Tssr75787	transcription start site region 75787	420 bp upstream
Tssr75788	transcription start site region 75788	398 bp upstream
Tssr75789	transcription start site region 75789	378 bp upstream
Tssr75790	transcription start site region 75790	108 bp upstream
Tssr75791	transcription start site region 75791	85 bp upstream
Tssr75792	transcription start site region 75792	72 bp upstream
Tssr75793	transcription start site region 75793	662 bp downstream
Tssr75794	transcription start site region 75794	816 bp downstream
Tssr75795	transcription start site region 75795	840 bp downstream
Tssr75796	transcription start site region 75796	1811 bp downstream
Tssr75797	transcription start site region 75797	1844 bp downstream
Tssr75798	transcription start site region 75798	1886 bp downstream
Tssr75799	transcription start site region 75799	1910 bp downstream