rs33816679 SNP Detail

Summary

• ID
  rs33816679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142131713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCGGTCC TCACCTGCCC
  ACTGCTGCCA GCTATACCTT CACTGCCCAG GTCTGGGGTC GAACCCTTCC CAGCAGCTCC
  CCTTTATCCG ACCAGCCGCC ACGTCCTGTA ACCAAAAGTA ACCGGGATGA ATGTCTGGCT
  CCCCATTCCT CTCCAACCCT AGCTCAGGCC CTTCAGCTTC ACTCCGATGT TTTCCAGCCT
  Y
  TGCGATGCCT TTGCTCTGCC TGAGCTAGCC CCTCAGTCCT TCAACATTCC TGCCAGACTC
  CAGATGCCGA GGTGCTCCTC GGACCCCACG ACTCTCCTCC AGCTCTCCCA TCTTCCCCAG
  TTTCCCCGAT ACCCCCCACC CCCACCCCCC ACCCCCCTCC CACACCCGGT GCTTCGGGCC
  CTCTAGCCCG GGCTTTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47351151	NES11525466	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33816679					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47351151	NES11525466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142131713 () rs orientation: forward

Symbol	Name	Function Class
Gm56420	predicted gene, 56420	1053 bp downstream
Gm56421	predicted gene, 56421	58 bp downstream
H19	H19, imprinted maternally expressed transcript	within coordinates
Mir675	microRNA 675	829 bp upstream
Rr658231	regulatory region 658231	159 bp proximal
Rr658232	regulatory region 658232	1283 bp proximal
Rr658233	regulatory region 658233	1894 bp proximal
Tssr2460	transcription start site region 2460	716 bp downstream
Tssr2461	transcription start site region 2461	50 bp downstream
Tssr70213	transcription start site region 70213	1905 bp downstream
Tssr70214	transcription start site region 70214	1323 bp downstream
Tssr70215	transcription start site region 70215	1000 bp downstream
Tssr70216	transcription start site region 70216	936 bp downstream
Tssr70217	transcription start site region 70217	919 bp downstream
Tssr70218	transcription start site region 70218	569 bp downstream
Tssr70219	transcription start site region 70219	531 bp downstream
Tssr70220	transcription start site region 70220	419 bp downstream
Tssr70221	transcription start site region 70221	380 bp downstream
Tssr70222	transcription start site region 70222	322 bp downstream
Tssr70223	transcription start site region 70223	180 bp downstream
Tssr70224	transcription start site region 70224	135 bp downstream
Tssr70225	transcription start site region 70225	97 bp downstream
Tssr70226	transcription start site region 70226	2 bp downstream
Tssr70227	transcription start site region 70227	61 bp upstream
Tssr70228	transcription start site region 70228	84 bp upstream
Tssr75817	transcription start site region 75817	1959 bp upstream
Tssr75818	transcription start site region 75818	1883 bp upstream
Tssr75819	transcription start site region 75819	1713 bp upstream
Tssr75820	transcription start site region 75820	1662 bp upstream
Tssr75821	transcription start site region 75821	1649 bp upstream
Tssr75822	transcription start site region 75822	1488 bp upstream
Tssr75823	transcription start site region 75823	1445 bp upstream
Tssr75824	transcription start site region 75824	1412 bp upstream
Tssr75825	transcription start site region 75825	1288 bp upstream
Tssr75826	transcription start site region 75826	1240 bp upstream
Tssr75827	transcription start site region 75827	1220 bp upstream
Tssr75828	transcription start site region 75828	1088 bp upstream
Tssr75829	transcription start site region 75829	598 bp upstream
Tssr75830	transcription start site region 75830	571 bp upstream
Tssr75831	transcription start site region 75831	550 bp upstream
Tssr75832	transcription start site region 75832	484 bp upstream
Tssr75833	transcription start site region 75833	407 bp upstream
Tssr75834	transcription start site region 75834	133 bp upstream
Tssr75835	transcription start site region 75835	101 bp upstream
Tssr75836	transcription start site region 75836	79 bp upstream
Tssr75837	transcription start site region 75837	56 bp upstream
Tssr75838	transcription start site region 75838	9 bp downstream
Tssr75839	transcription start site region 75839	22 bp downstream
Tssr75840	transcription start site region 75840	64 bp downstream
Tssr75841	transcription start site region 75841	66 bp downstream
Tssr75842	transcription start site region 75842	103 bp downstream
Tssr75843	transcription start site region 75843	110 bp downstream
Tssr75844	transcription start site region 75844	117 bp downstream
Tssr75845	transcription start site region 75845	163 bp downstream