rs33816681 SNP Detail

Summary

• ID
  rs33816681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142132417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGCTGC CCTTTACTCA
  GTTTGTATAA TGACCACAAT GGGAATTTGA GGGCATGGGT CTCATACTAT CCCACGGAGT
  ATGAACAGCC TACGAGTGGC TAACCCCCAG CCTTTGTCCT AGTCTGCTTG ACTGACCTTA
  TCTGGCCGCA GTGGTTTCAA CAAGGTAGTA GCTAATTTGG GCACTCCTCA CCGTCCCTTT
  Y
  CTGGGTGAGT CGTCACGTTT GTCAGGACTC TCTTGCGATG AGTTTTATTA GTTATCTTAC
  AGTCTGGTCT TGGTCACCCC AGTCAACCGG AGGCACAGTA TGGTCTCCCT ATCCTACTGA
  AGTACTACTA TCAGTGATAG AATGGGGACA GGAGAGATGC CCTGTCCCTC CAGCCACGTG
  CGTGCGTATA CCATTGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47351154	NES11525467	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33816681					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47351154	NES11525467	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142132417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	1632 bp proximal
Gm56420	predicted gene, 56420	1757 bp downstream
Gm56421	predicted gene, 56421	762 bp downstream
H19	H19, imprinted maternally expressed transcript	534 bp upstream
Mir675	microRNA 675	1533 bp upstream
Rr27	regulatory region 27	1468 bp proximal
Rr370601	regulatory region 370601	1568 bp upstream
Rr658231	regulatory region 658231	45 bp distal
Rr658232	regulatory region 658232	579 bp proximal
Rr658233	regulatory region 658233	1190 bp proximal
Rr658234	regulatory region 658234	1530 bp proximal
Rr658235	regulatory region 658235	1626 bp proximal
Tssr2460	transcription start site region 2460	1420 bp downstream
Tssr2461	transcription start site region 2461	754 bp downstream
Tssr70215	transcription start site region 70215	1704 bp downstream
Tssr70216	transcription start site region 70216	1640 bp downstream
Tssr70217	transcription start site region 70217	1623 bp downstream
Tssr70218	transcription start site region 70218	1273 bp downstream
Tssr70219	transcription start site region 70219	1235 bp downstream
Tssr70220	transcription start site region 70220	1123 bp downstream
Tssr70221	transcription start site region 70221	1084 bp downstream
Tssr70222	transcription start site region 70222	1026 bp downstream
Tssr70223	transcription start site region 70223	884 bp downstream
Tssr70224	transcription start site region 70224	839 bp downstream
Tssr70225	transcription start site region 70225	801 bp downstream
Tssr70226	transcription start site region 70226	706 bp downstream
Tssr70227	transcription start site region 70227	624 bp downstream
Tssr70228	transcription start site region 70228	611 bp downstream
Tssr75825	transcription start site region 75825	1992 bp upstream
Tssr75826	transcription start site region 75826	1944 bp upstream
Tssr75827	transcription start site region 75827	1924 bp upstream
Tssr75828	transcription start site region 75828	1792 bp upstream
Tssr75829	transcription start site region 75829	1302 bp upstream
Tssr75830	transcription start site region 75830	1275 bp upstream
Tssr75831	transcription start site region 75831	1254 bp upstream
Tssr75832	transcription start site region 75832	1188 bp upstream
Tssr75833	transcription start site region 75833	1111 bp upstream
Tssr75834	transcription start site region 75834	837 bp upstream
Tssr75835	transcription start site region 75835	805 bp upstream
Tssr75836	transcription start site region 75836	783 bp upstream
Tssr75837	transcription start site region 75837	760 bp upstream
Tssr75838	transcription start site region 75838	690 bp upstream
Tssr75839	transcription start site region 75839	668 bp upstream
Tssr75840	transcription start site region 75840	639 bp upstream
Tssr75841	transcription start site region 75841	612 bp upstream
Tssr75842	transcription start site region 75842	595 bp upstream
Tssr75843	transcription start site region 75843	589 bp upstream
Tssr75844	transcription start site region 75844	559 bp upstream
Tssr75845	transcription start site region 75845	526 bp upstream