rs33816988 SNP Detail

Summary

• ID
  rs33816988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181977383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAACTGA ATAAAAGATA TCAAGTGGAG GTCTGATGTG
  ATTGGTGCTA AGGCGAGGTC TTGCTTCTTG CTGTAGTTTC TCCTGACTCC TGGTTTTTGT
  W
  TTTCTCAGTT TGGAGTTTTA CTGTATAAAA GAGGTCCCAG CTGGGCGTGG TGGTGCACGC
  CTTTAATCCC AGCACTCGGG AGGCAGCACA GGCAGATTTC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49538086	NES12842826	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33816988					SNP	A	A	A	T	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538086	NES12842826	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181977383 () rs orientation: forward

Symbol	Name	Function Class
Rr424881	regulatory region 424881	368 bp distal
Rr424882	regulatory region 424882	410 bp distal
Rr424883	regulatory region 424883	238 bp proximal
Rr424884	regulatory region 424884	329 bp proximal