rs33816989 SNP Detail

Summary

• ID
  rs33816989
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181975920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAGGAGC CAACCCAGTG
  GGTGGCTGTC TTCCATGGTT TCCGCCTCAG TGTCCGTTTA TGCTCCTGCC CCGGCTTCTC
  TTGGTGATGG ACTGTAACCG ATAGCCAAAT AAACCTCTCC CTCCCTGCGT TGCCTTTGGT
  CACAGTATTT ATGACAGCAA AAGAAAGAAA ACTAGAACAC CAGGGAAGGA ACTGCTCTCC
  K
  TTCTCACGTC TCCATAATTT CCCTGTCTTC TAACTCAGTG TCCTGACTGA GGACAGGAGA
  TGGAAGGATG TCTAACCACA ATAACCACAA AGGGATATTA CCACAATGCT CTCTGGAATG
  TGCAGATAGG CTCATTCTTG AAACTCTTTG AAGTCACAAA TTCCCGCTTT GCCTATTAAC
  ACTGCCTATT AACTAGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49538087	NES12842911	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33816989					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538087	NES12842911	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181975920 () rs orientation: forward

Symbol	Name	Function Class
Rr424881	regulatory region 424881	582 bp proximal
Rr424882	regulatory region 424882	1032 bp proximal
Rr424883	regulatory region 424883	1701 bp proximal
Rr424884	regulatory region 424884	1792 bp proximal