rs33817089 SNP Detail

Summary

• ID
  rs33817089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142016371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGTGA AGGGTGCCCA
  CAGCTCTGGC GGTCCCAGCC GATCCCTAGT CATCTTGCTG TAGGACCGGA GCTGGGCTGC
  ACCTGTGCCT GTCAGTCAGG AACTCCTGTT CCACAATCCT ACAGCCTTAA AGGGGCCTGG
  GAGCCCCTTA AAGACCTCCT CCCCAAAATG GAGGAAGAAA GAACAAAGTG CACCACCGAC
  Y
  TTTCAAAATG AAACTGAGAC CCTGGAGGAG GAGATACTGT GCCTGCTGTA CAGGGTGACT
  CACAGACCAG GGATTCTCCT GTTTGAAGTG GTAAAGTCCC CAGTGCCCAG AAGGGGTTAT
  TTGGTCTAAG AAGTTCCCAT TCAGGAAGCC CCAGAAGCCC AGAGCTGAAC AGGGTCAGTT
  TGGGCTGGAT CAGATCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47350713	NES11529821	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33817089					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350713	NES11529821	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142016371 () rs orientation: forward

Symbol	Name	Function Class
D430042D18Rik	Riken cDNA D430042D18 gene	1910 bp downstream
Lsp1	lymphocyte specific 1	within coordinates
Rr166987	regulatory region 166987	within coordinates
Rr166988	regulatory region 166988	229 bp proximal
Rr400723	regulatory region 400723	1733 bp downstream
Tssr2454	transcription start site region 2454	1120 bp upstream
Tssr70170	transcription start site region 70170	1802 bp downstream
Tssr70171	transcription start site region 70171	1748 bp downstream