rs33817160 SNP Detail

Summary

• ID
  rs33817160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47924212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGCTG CCTCTACCCT
  GGGCAGCCAA GGTCAGTAGA TGGCTGAGAG CAGATGGGAG GAGCATGGCT TAGAGTATTT
  ACGTTAATGG ATCTGCTTGC TTTTCTGTCA AGGGTAGCGG TCCTGACTGA GGCAGGATGT
  GTTTGTGGCC TCATTCGTTC TTGGTCCATC TTATATTATG GTGGTCAGTT TGCAGTTTGA
  Y
  CTATTTGTTT AAAGATTTGT TTTTATTTTC AAATGTGTGT GTGTACAAGC ACTTGTGCCC
  CTGTGTGTGG CTATATGCAC ACAAGTGTGG GTGCTTATGG AGGCTAGAGG TATCAGATCC
  TCTGGAGCTA GAGTCACAGG TAGTTATGAG CTTTCTGCTG ATATGGGTAC TGGGAACTAA
  ACTTGGGTTC AAGGCCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365517	NES12221663	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33817160					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365517	NES12221663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47924212 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	1795 bp upstream
Cpgi9265	CpG island 9265	1457 bp distal
Gm20517	predicted gene 20517	within coordinates
Med20	mediator complex subunit 20	within coordinates
Rr331713	regulatory region 331713	389 bp proximal
Rr337817	regulatory region 337817	1611 bp proximal
Rr339937	regulatory region 339937	11 bp distal
Rr341910	regulatory region 341910	1989 bp proximal
Rr405326	regulatory region 405326	1618 bp downstream
Tssr144986	transcription start site region 144986	1719 bp downstream
Tssr144987	transcription start site region 144987	1668 bp downstream
Tssr144988	transcription start site region 144988	1651 bp downstream
Tssr148448	transcription start site region 148448	1853 bp upstream
Tssr148449	transcription start site region 148449	1743 bp upstream