rs33817161 SNP Detail

Summary

• ID
  rs33817161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47923861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGATTC CAACATTTGG
  GAGGCAGAGT CAGGCAAGTT TCTGTGAATT CCAGGCCAGC CTGGTCTACC AAGTGAGTTC
  CAGGAACTCT TGGGGACTGA TGGGTGGGGA TCAGAGATGT CTAAGTAACT CCTAGCCCTG
  CTGATCCGTT ACCTGTTGGG GAATTGAGTG GCTTAGCCAG AAGCTCTGTG TCTCTGGACC
  Y
  TGCTGACTTG GCGTTGTGTT TCTCAGTGTG TCCCAGATGC CTGTGGCTGA GGGCAAGAGT
  CTCCAGCAGA CAGTGGAGCT CCTCACCAAG AAACTGGAGA TGCTTGGAGC AGAGAAACAA
  GGGACATTTT GTGTGGACTG TGAGACTTAC CACACAGCTG CCTCTACCCT GGGCAGCCAA
  GGTCAGTAGA TGGCTGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365518	NES12221662	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33817161					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365518	NES12221662	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47923861 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	1444 bp upstream
Cpgi9265	CpG island 9265	1106 bp distal
Gm20517	predicted gene 20517	within coordinates
Med20	mediator complex subunit 20	within coordinates
Rr331713	regulatory region 331713	740 bp proximal
Rr337817	regulatory region 337817	1962 bp proximal
Rr339937	regulatory region 339937	within coordinates
Rr405326	regulatory region 405326	1267 bp downstream
Tssr5145	transcription start site region 5145	1685 bp upstream
Tssr144986	transcription start site region 144986	1368 bp downstream
Tssr144987	transcription start site region 144987	1317 bp downstream
Tssr144988	transcription start site region 144988	1300 bp downstream
Tssr148446	transcription start site region 148446	1758 bp upstream
Tssr148447	transcription start site region 148447	1692 bp upstream
Tssr148448	transcription start site region 148448	1502 bp upstream
Tssr148449	transcription start site region 148449	1392 bp upstream