rs33817162 SNP Detail

Summary

• ID
  rs33817162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47923526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGTTTGG GCACCGTGCT
  TTTCTGGGTA TTAATTTTAA AGTACTCGGC CTCAGCACTT AAAAGTCTTG GTAGTGGTGT
  GCTTCTTTCC AGTTAAAGAA GCTTGGAGGC CAGGGGCCAC AGGTCTGCCC TGTGAAAGGA
  AGGCTCTTGC CACAGTTGAC ACTAGGAGCC TCATCTCATA CTTCTACCCT ACTGTAAAGA
  R
  TGCCTGTGAG CAATGAAGAC AGATCACAGC AGAGTCATTT AGAGTTCAGT TTCCCTGTTT
  GCAGTAAGTT GATACAGGAC AGGGCCTTTC CTGGGGCCTT TGGAAGAGTC AGGCAATCCA
  TCTGAGGGCT GATGCCTTTG ATTCCAACAT TTGGGAGGCA GAGTCAGGCA AGTTTCTGTG
  AATTCCAGGC CAGCCTGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365519	NES12221714	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33817162					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365519	NES12221714	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47923526 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	1109 bp upstream
Cpgi9265	CpG island 9265	771 bp distal
Gm20517	predicted gene 20517	within coordinates
Med20	mediator complex subunit 20	within coordinates
Rr331713	regulatory region 331713	1075 bp proximal
Rr339937	regulatory region 339937	within coordinates
Rr405326	regulatory region 405326	932 bp downstream
Tssr5145	transcription start site region 5145	1350 bp upstream
Tssr144986	transcription start site region 144986	1033 bp downstream
Tssr144987	transcription start site region 144987	982 bp downstream
Tssr144988	transcription start site region 144988	965 bp downstream
Tssr148446	transcription start site region 148446	1423 bp upstream
Tssr148447	transcription start site region 148447	1357 bp upstream
Tssr148448	transcription start site region 148448	1167 bp upstream
Tssr148449	transcription start site region 148449	1057 bp upstream