rs33817190 SNP Detail

Summary

• ID
  rs33817190
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181715467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAGTGA GCGAAGAGGG
  ACAGTGTCAG AAGGGACTGA GAGCTCTTGG GTAAGTGACA TGTTGGACCC AAGGCAGAGA
  GCTAGAGGCC CAGGGCTGAC ATTGGCACCT AGGGAAGTCA GTGGCTCTTC TGCCAGCTCA
  CTTTCACTGT GAGCTTTGCC TGGGAGTCCA CCCAAGTTGC ACGTAACTCC TAAGCACAGA
  W
  GCCTCCACTC AAGCCATCTG TAGCCATGAG CCACAAGAGC TGAGACTACA CATGAGCCAC
  CTTGTCAACT GGGGATACAG GGCCCCTCAG TCCTCCCCTG TTACTGGGAG AGCCAGTCTA
  GAGGACATGG AGATGGCCTT CGCCCTCAGA GCCCACCGTG TTAGGCCATT GCTAGCTGGT
  GGACCCAAAG GCCTTAAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49539230	NES12813428	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33817190					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49539230	NES12813428	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181715467 () rs orientation: forward

Symbol	Name	Function Class
Gm33669	predicted gene, 33669	1156 bp downstream
Rr396680	regulatory region 396680	988 bp upstream
Rr424824	regulatory region 424824	780 bp proximal
Rr424825	regulatory region 424825	1050 bp proximal
Rr424826	regulatory region 424826	1099 bp proximal
Rr424827	regulatory region 424827	1428 bp proximal