rs33817234 SNP Detail

Summary

• ID
  rs33817234
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:47880283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCTTGA ACTGCTGATC
  CTCCTGACTT CATCTCCCAA AGGCTGGAGC GGTAGTCATG AGTGACTAAG TTTGGCTTGC
  TTTTCCTTTC ATCTGTCCTG GCCCAACCCC GGGATTCTGT AAATTCTCAA TTATTCACGC
  TGTGGAGAGC TAAGGGGGCA ACTGCAAATG AGAGAATACA TTAATAAATT AGGAAACGCA
  K
  TTGCCCTCTG ATAATAAGGT TATTGTTATG GATGAAGAGG CTTGACCCAG TAGATTTTTG
  ATTTGAGAGG AATTATATCC AGTGTAGGAG GGGGCTGGCC CCTGGGAATT TCCAGTATGA
  AAAGGCACGA GGAAGCACCC AGAGGCAGTG TGCTGATGCA GGAAGTTGTG GGCTTGTTTT
  GCTGTTTGTT TTTTGTTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48365602	NES12224132	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33817234					SNP	T	T	T	T	T	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365602	NES12224132	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47880283 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	Intron
D17Dcr11	DNA Segment, Chr 17, Derry C. Roopenian 11	832 bp proximal
D17Mit68	DNA segment, Chr 17, Massachusetts Institute of Technology 68	798 bp proximal
Rr392688	regulatory region 392688	1778 bp upstream
Rr528048	regulatory region 528048	1746 bp distal
Rr528049	regulatory region 528049	within coordinates
Rr528050	regulatory region 528050	1986 bp proximal