rs33817754 SNP Detail

Summary

• ID
  rs33817754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142132640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACTCTC TTGCGATGAG
  TTTTATTAGT TATCTTACAG TCTGGTCTTG GTCACCCCAG TCAACCGGAG GCACAGTATG
  GTCTCCCTAT CCTACTGAAG TACTACTATC AGTGATAGAA TGGGGACAGG AGAGATGCCC
  TGTCCCTCCA GCCACGTGCG TGCGTATACC ATTGCTCTTA GCTTCTGTTG AAAGTTATGC
  R
  GCTGAAATCC ACAGAGTCAG CATCCACAAA TCAGGGCACC AGAGAGTAGA GCAGCTCTAG
  ATGGAAGTGA CCGGAGCTCC AGATGGGAGG AGGACTCAAG GGCTGACCAG TCATGACCAC
  TCAGCAGTGG TTCTCACCTA TGTGAGGTGC AATAGCACCT TGGCAGATCC TCAGCCTAGT
  GGCTGCATGT CAGCTGAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47351157	NES11525468	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33817754					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47351157	NES11525468	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142132640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	1409 bp proximal
Gm56420	predicted gene, 56420	1980 bp downstream
Gm56421	predicted gene, 56421	985 bp downstream
H19	H19, imprinted maternally expressed transcript	757 bp upstream
Mir675	microRNA 675	1756 bp upstream
Rr27	regulatory region 27	1245 bp proximal
Rr370601	regulatory region 370601	1345 bp upstream
Rr658231	regulatory region 658231	268 bp distal
Rr658232	regulatory region 658232	356 bp proximal
Rr658233	regulatory region 658233	967 bp proximal
Rr658234	regulatory region 658234	1307 bp proximal
Rr658235	regulatory region 658235	1403 bp proximal
Tssr2460	transcription start site region 2460	1643 bp downstream
Tssr2461	transcription start site region 2461	977 bp downstream
Tssr70215	transcription start site region 70215	1927 bp downstream
Tssr70216	transcription start site region 70216	1863 bp downstream
Tssr70217	transcription start site region 70217	1846 bp downstream
Tssr70218	transcription start site region 70218	1496 bp downstream
Tssr70219	transcription start site region 70219	1458 bp downstream
Tssr70220	transcription start site region 70220	1346 bp downstream
Tssr70221	transcription start site region 70221	1307 bp downstream
Tssr70222	transcription start site region 70222	1249 bp downstream
Tssr70223	transcription start site region 70223	1107 bp downstream
Tssr70224	transcription start site region 70224	1062 bp downstream
Tssr70225	transcription start site region 70225	1024 bp downstream
Tssr70226	transcription start site region 70226	929 bp downstream
Tssr70227	transcription start site region 70227	847 bp downstream
Tssr70228	transcription start site region 70228	834 bp downstream
Tssr75829	transcription start site region 75829	1525 bp upstream
Tssr75830	transcription start site region 75830	1498 bp upstream
Tssr75831	transcription start site region 75831	1477 bp upstream
Tssr75832	transcription start site region 75832	1411 bp upstream
Tssr75833	transcription start site region 75833	1334 bp upstream
Tssr75834	transcription start site region 75834	1060 bp upstream
Tssr75835	transcription start site region 75835	1028 bp upstream
Tssr75836	transcription start site region 75836	1006 bp upstream
Tssr75837	transcription start site region 75837	983 bp upstream
Tssr75838	transcription start site region 75838	913 bp upstream
Tssr75839	transcription start site region 75839	891 bp upstream
Tssr75840	transcription start site region 75840	862 bp upstream
Tssr75841	transcription start site region 75841	835 bp upstream
Tssr75842	transcription start site region 75842	818 bp upstream
Tssr75843	transcription start site region 75843	812 bp upstream
Tssr75844	transcription start site region 75844	782 bp upstream
Tssr75845	transcription start site region 75845	749 bp upstream