rs33817757 SNP Detail

Summary

• ID
  rs33817757
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142132726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCCTACT GAAGTACTAC
  TATCAGTGAT AGAATGGGGA CAGGAGAGAT GCCCTGTCCC TCCAGCCACG TGCGTGCGTA
  TACCATTGCT CTTAGCTTCT GTTGAAAGTT ATGCAGCTGA AATCCACAGA GTCAGCATCC
  ACAAATCAGG GCACCAGAGA GTAGAGCAGC TCTAGATGGA AGTGACCGGA GCTCCAGATG
  S
  GAGGAGGACT CAAGGGCTGA CCAGTCATGA CCACTCAGCA GTGGTTCTCA CCTATGTGAG
  GTGCAATAGC ACCTTGGCAG ATCCTCAGCC TAGTGGCTGC ATGTCAGCTG AGTACTCATT
  TCTGGCTCCT AGTGATCCTT CATTTTTACT CTGTGAAAAG CCCTGGTCAT TGCTGTGGGT
  GGACCCTAAG TTATGATACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47351160	NES11525469	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33817757					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47351160	NES11525469	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142132726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	1323 bp proximal
Gm56421	predicted gene, 56421	1071 bp downstream
H19	H19, imprinted maternally expressed transcript	843 bp upstream
Mir675	microRNA 675	1842 bp upstream
Rr27	regulatory region 27	1159 bp proximal
Rr370601	regulatory region 370601	1259 bp upstream
Rr658231	regulatory region 658231	354 bp distal
Rr658232	regulatory region 658232	270 bp proximal
Rr658233	regulatory region 658233	881 bp proximal
Rr658234	regulatory region 658234	1221 bp proximal
Rr658235	regulatory region 658235	1317 bp proximal
Tssr2460	transcription start site region 2460	1729 bp downstream
Tssr2461	transcription start site region 2461	1063 bp downstream
Tssr70216	transcription start site region 70216	1949 bp downstream
Tssr70217	transcription start site region 70217	1932 bp downstream
Tssr70218	transcription start site region 70218	1582 bp downstream
Tssr70219	transcription start site region 70219	1544 bp downstream
Tssr70220	transcription start site region 70220	1432 bp downstream
Tssr70221	transcription start site region 70221	1393 bp downstream
Tssr70222	transcription start site region 70222	1335 bp downstream
Tssr70223	transcription start site region 70223	1193 bp downstream
Tssr70224	transcription start site region 70224	1148 bp downstream
Tssr70225	transcription start site region 70225	1110 bp downstream
Tssr70226	transcription start site region 70226	1015 bp downstream
Tssr70227	transcription start site region 70227	933 bp downstream
Tssr70228	transcription start site region 70228	920 bp downstream
Tssr75829	transcription start site region 75829	1611 bp upstream
Tssr75830	transcription start site region 75830	1584 bp upstream
Tssr75831	transcription start site region 75831	1563 bp upstream
Tssr75832	transcription start site region 75832	1497 bp upstream
Tssr75833	transcription start site region 75833	1420 bp upstream
Tssr75834	transcription start site region 75834	1146 bp upstream
Tssr75835	transcription start site region 75835	1114 bp upstream
Tssr75836	transcription start site region 75836	1092 bp upstream
Tssr75837	transcription start site region 75837	1069 bp upstream
Tssr75838	transcription start site region 75838	999 bp upstream
Tssr75839	transcription start site region 75839	977 bp upstream
Tssr75840	transcription start site region 75840	948 bp upstream
Tssr75841	transcription start site region 75841	921 bp upstream
Tssr75842	transcription start site region 75842	904 bp upstream
Tssr75843	transcription start site region 75843	898 bp upstream
Tssr75844	transcription start site region 75844	868 bp upstream
Tssr75845	transcription start site region 75845	835 bp upstream