rs33817760 SNP Detail

Summary

• ID
  rs33817760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142132851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGTCAG CATCCACAAA
  TCAGGGCACC AGAGAGTAGA GCAGCTCTAG ATGGAAGTGA CCGGAGCTCC AGATGGGAGG
  AGGACTCAAG GGCTGACCAG TCATGACCAC TCAGCAGTGG TTCTCACCTA TGTGAGGTGC
  AATAGCACCT TGGCAGATCC TCAGCCTAGT GGCTGCATGT CAGCTGAGTA CTCATTTCTG
  R
  CTCCTAGTGA TCCTTCATTT TTACTCTGTG AAAAGCCCTG GTCATTGCTG TGGGTGGACC
  CTAAGTTATG ATACTGACGG ACACCTCCAA TTTGGTCATA AATAGACCCC AGCCTCTATT
  ATCTTGGCGC TGTAATGTGT GTCTGTGCTG TCACCTTGTG GTGGTTGTGG CTATCTCTGC
  GCTCTTAAAC AAATGATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47351163	NES11525470	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33817760					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47351163	NES11525470	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142132851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	1198 bp proximal
Gm56421	predicted gene, 56421	1196 bp downstream
H19	H19, imprinted maternally expressed transcript	968 bp upstream
Mir675	microRNA 675	1967 bp upstream
Rr27	regulatory region 27	1034 bp proximal
Rr370601	regulatory region 370601	1134 bp upstream
Rr658231	regulatory region 658231	479 bp distal
Rr658232	regulatory region 658232	145 bp proximal
Rr658233	regulatory region 658233	756 bp proximal
Rr658234	regulatory region 658234	1096 bp proximal
Rr658235	regulatory region 658235	1192 bp proximal
Tssr2460	transcription start site region 2460	1854 bp downstream
Tssr2461	transcription start site region 2461	1188 bp downstream
Tssr70218	transcription start site region 70218	1707 bp downstream
Tssr70219	transcription start site region 70219	1669 bp downstream
Tssr70220	transcription start site region 70220	1557 bp downstream
Tssr70221	transcription start site region 70221	1518 bp downstream
Tssr70222	transcription start site region 70222	1460 bp downstream
Tssr70223	transcription start site region 70223	1318 bp downstream
Tssr70224	transcription start site region 70224	1273 bp downstream
Tssr70225	transcription start site region 70225	1235 bp downstream
Tssr70226	transcription start site region 70226	1140 bp downstream
Tssr70227	transcription start site region 70227	1058 bp downstream
Tssr70228	transcription start site region 70228	1045 bp downstream
Tssr75829	transcription start site region 75829	1736 bp upstream
Tssr75830	transcription start site region 75830	1709 bp upstream
Tssr75831	transcription start site region 75831	1688 bp upstream
Tssr75832	transcription start site region 75832	1622 bp upstream
Tssr75833	transcription start site region 75833	1545 bp upstream
Tssr75834	transcription start site region 75834	1271 bp upstream
Tssr75835	transcription start site region 75835	1239 bp upstream
Tssr75836	transcription start site region 75836	1217 bp upstream
Tssr75837	transcription start site region 75837	1194 bp upstream
Tssr75838	transcription start site region 75838	1124 bp upstream
Tssr75839	transcription start site region 75839	1102 bp upstream
Tssr75840	transcription start site region 75840	1073 bp upstream
Tssr75841	transcription start site region 75841	1046 bp upstream
Tssr75842	transcription start site region 75842	1029 bp upstream
Tssr75843	transcription start site region 75843	1023 bp upstream
Tssr75844	transcription start site region 75844	993 bp upstream
Tssr75845	transcription start site region 75845	960 bp upstream