rs33817763 SNP Detail

Summary

• ID
  rs33817763
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142132893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTAGAT GGAAGTGACC
  GGAGCTCCAG ATGGGAGGAG GACTCAAGGG CTGACCAGTC ATGACCACTC AGCAGTGGTT
  CTCACCTATG TGAGGTGCAA TAGCACCTTG GCAGATCCTC AGCCTAGTGG CTGCATGTCA
  GCTGAGTACT CATTTCTGGC TCCTAGTGAT CCTTCATTTT TACTCTGTGA AAAGCCCTGG
  Y
  CATTGCTGTG GGTGGACCCT AAGTTATGAT ACTGACGGAC ACCTCCAATT TGGTCATAAA
  TAGACCCCAG CCTCTATTAT CTTGGCGCTG TAATGTGTGT CTGTGCTGTC ACCTTGTGGT
  GGTTGTGGCT ATCTCTGCGC TCTTAAACAA ATGATCCTTT TCAGAGATCG GTATATAAGA
  TGGAAAAGAA TGACCCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47351166	NES11525471	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33817763					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47351166	NES11525471	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142132893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	1156 bp proximal
Gm56421	predicted gene, 56421	1238 bp downstream
H19	H19, imprinted maternally expressed transcript	1010 bp upstream
Rr27	regulatory region 27	992 bp proximal
Rr370601	regulatory region 370601	1092 bp upstream
Rr658231	regulatory region 658231	521 bp distal
Rr658232	regulatory region 658232	103 bp proximal
Rr658233	regulatory region 658233	714 bp proximal
Rr658234	regulatory region 658234	1054 bp proximal
Rr658235	regulatory region 658235	1150 bp proximal
Tssr2460	transcription start site region 2460	1896 bp downstream
Tssr2461	transcription start site region 2461	1230 bp downstream
Tssr70218	transcription start site region 70218	1749 bp downstream
Tssr70219	transcription start site region 70219	1711 bp downstream
Tssr70220	transcription start site region 70220	1599 bp downstream
Tssr70221	transcription start site region 70221	1560 bp downstream
Tssr70222	transcription start site region 70222	1502 bp downstream
Tssr70223	transcription start site region 70223	1360 bp downstream
Tssr70224	transcription start site region 70224	1315 bp downstream
Tssr70225	transcription start site region 70225	1277 bp downstream
Tssr70226	transcription start site region 70226	1182 bp downstream
Tssr70227	transcription start site region 70227	1100 bp downstream
Tssr70228	transcription start site region 70228	1087 bp downstream
Tssr75829	transcription start site region 75829	1778 bp upstream
Tssr75830	transcription start site region 75830	1751 bp upstream
Tssr75831	transcription start site region 75831	1730 bp upstream
Tssr75832	transcription start site region 75832	1664 bp upstream
Tssr75833	transcription start site region 75833	1587 bp upstream
Tssr75834	transcription start site region 75834	1313 bp upstream
Tssr75835	transcription start site region 75835	1281 bp upstream
Tssr75836	transcription start site region 75836	1259 bp upstream
Tssr75837	transcription start site region 75837	1236 bp upstream
Tssr75838	transcription start site region 75838	1166 bp upstream
Tssr75839	transcription start site region 75839	1144 bp upstream
Tssr75840	transcription start site region 75840	1115 bp upstream
Tssr75841	transcription start site region 75841	1088 bp upstream
Tssr75842	transcription start site region 75842	1071 bp upstream
Tssr75843	transcription start site region 75843	1065 bp upstream
Tssr75844	transcription start site region 75844	1035 bp upstream
Tssr75845	transcription start site region 75845	1002 bp upstream