rs33818014 SNP Detail

Summary

• ID
  rs33818014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47922944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCCGGT TGTGTGGATG
  GGGGACACTG CGTGGGACTT CTCTCTTCCC AGACACACCC CTTTGGCAAA GGGAGCAGCG
  CATCCCTAGG ACCCGCCAGG AGTTGTACCT TTTTCTTGGT ACCTCTTCCT GTCCTTGAGG
  CCTTGTAGTG TCGCTACTAG CACCCAAAGG TTAGAAATAG GGTTTCTAGA TTAGGAGTTG
  Y
  TCGCAGAAAG GGATAAGAGT GGCGCGAGGA GAAAGTGACT TTTCTATTTT GCTTGCAGTT
  ACAGACTTTG AATTGGCCAT TTTAAGGTGT TGGGGCTAGT GACAGAGGTA GGAGGAAAGG
  AGCGGTTGGG AGTTTGGAGT TCGGAGTACC AGGCAGAGAC AATTTTTCGA GCTGGGTGTC
  TCACTGTGTA GGCTTGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365521	NES12221803	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818014					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365521	NES12221803	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47922944 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	527 bp upstream
Cpgi9265	CpG island 9265	189 bp distal
Gm20517	predicted gene 20517	within coordinates
Med20	mediator complex subunit 20	within coordinates
Rr331712	regulatory region 331712	1944 bp distal
Rr331713	regulatory region 331713	1657 bp proximal
Rr339937	regulatory region 339937	within coordinates
Rr405326	regulatory region 405326	350 bp downstream
Tssr5145	transcription start site region 5145	768 bp upstream
Tssr144986	transcription start site region 144986	451 bp downstream
Tssr144987	transcription start site region 144987	400 bp downstream
Tssr144988	transcription start site region 144988	383 bp downstream
Tssr148446	transcription start site region 148446	841 bp upstream
Tssr148447	transcription start site region 148447	775 bp upstream
Tssr148448	transcription start site region 148448	585 bp upstream
Tssr148449	transcription start site region 148449	475 bp upstream